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Panpaporn Phujumpa. Genome sequencing and annotation of limosilactobacillus fermentum KUB-D18 and Its comparison with other strains. Master's Degree(Biology). Kasetsart University. Office of the University Library. : Kasetsart University, 2022.
Genome sequencing and annotation of limosilactobacillus fermentum KUB-D18 and Its comparison with other strains
Name: Panpaporn Phujumpa
Classification :.LCCS: QR121
LCSH:
Lactic acid bacteria
LCSH:
Lactobacillus
LCSH:
Genomes
LCSH:
Probiotics
Abstract:
Limosilactobacillus fermentum KUB-D18 is a heterofermentative lactic acid bacterium that its potential probiotic relevance originally isolated from the chicken duodenum intestine. This study sequenced a genome and annotated its genes and functions in relation to probiotic properties. As a result, the genome sequence of L. fermentum KUB-D18 approximately contained 2.02 Mbps with GC content of 51.7%. After annotating the genome by integrated protein and pathway databases, 2,158 protein-encoding genes were majorly annotated for metabolisms of amino acids, carbohydrates and cofactors as well as vitamins which showed a versatile metabolic capability to gastrointestinal microhabitats. According to the comparative genome analysis of L. fermentum KUB-D18 and the other related strains, L. fermentum KUB-D18 showed common characteristics e.g., folate biosynthesis and bile salt hydrolase enzymes-related cholesterol lowering effect as well as a unique gene cluster involved in metabolism of L-ascorbic acid of L. fermentum KUB-D18. Taken together, L. fermentum KUB-D18 genome provides the genetic basis towards cellular capability for further elucidating the functional mechanisms of its probiotic properties. This study serves for designing desirable targets for the development of probiotic foods and feeds.
Kasetsart University. Office of the University Library
Address:
Bangkok
Email:
tdckulib@ku.ac.th
Name: Wanwipa Vongsangnak
Role:
Thesis Advisor
Name: Massalin Nakphaichit
Role:
Thesis CO-Advisor
Created:
2022
Modified:
2025-07-20
Issued:
2025-07-20
วิทยานิพนธ์/Thesis
application/pdf
URL: https://www.lib.ku.ac.th/KUthesis/2565/panpaporn-phu-all.pdf
CallNumber:
QR121 .P36
eng
DegreeName: Master of Science
Level: Master's Degree
Descipline: Biology
Grantor: Kasetsart University
©copyrights Kasetsart University
RightsAccess:
ใช้เวลา
0.022009 วินาที
Panpaporn Phujumpa
| Title | Contributor | Type |
|---|---|---|
| Genome sequencing and annotation of limosilactobacillus fermentum KUB-D18 and Its comparison with other strains
มหาวิทยาลัยเกษตรศาสตร์ Panpaporn Phujumpa | Wanwipa Vongsangnak | วิทยานิพนธ์/Thesis |
Wanwipa Vongsangnak
| Title | Creator | Type and Date Create |
|---|---|---|
| Functional annotation of metabolic transporters in aspergillus oryzae at a genome-scale
มหาวิทยาลัยเกษตรศาสตร์ Wanwipa Vongsangnak ;Wut Taksintum | Nachon Raethong | วิทยานิพนธ์/Thesis |
| Reconstruction of core iron-associated protein network of pasteurella multocida using comparative genome-scale analysis
มหาวิทยาลัยเกษตรศาสตร์ Wanwipa Vongsangnak ;Teerasak E-kobon | Theeraphol Jatuponwiphat | วิทยานิพนธ์/Thesis |
| Genome sequencing and annotation of limosilactobacillus fermentum KUB-D18 and Its comparison with other strains
มหาวิทยาลัยเกษตรศาสตร์ Wanwipa Vongsangnak | Panpaporn Phujumpa | วิทยานิพนธ์/Thesis |
| Transcriptome profiling of Cordyceps militaris under light and developmental stages
มหาวิทยาลัยเกษตรศาสตร์ Wanwipa Vongsangnak | Roypim Thananusak | วิทยานิพนธ์/Thesis |
Massalin Nakphaichit
| Title | Creator | Type and Date Create |
|---|---|---|
| Characterisation of anaerobically treated molasses wastewater from an ethanol production plant and its effects on soil bacteria
มหาวิทยาลัยเกษตรศาสตร์ Nuttakan Nitayapat;Massalin Nakphaichit | Chanita Phromkeeree | วิทยานิพนธ์/Thesis |
| Quality improvement of copra meal for swine feed
มหาวิทยาลัยเกษตรศาสตร์ Suttipun Keawsompong;Massalin Nakphaichit | Jurairat Rungruangsaphakun. | วิทยานิพนธ์/Thesis |
| Efficacy of triphala extracts on obese fecal microbiota and metabolome in the human gut model
มหาวิทยาลัยเกษตรศาสตร์ Paiboon Tunsagool;Massalin Nakphaichit | Pincha Kwandee. | วิทยานิพนธ์/Thesis |
| Development of genome-scale metabolic model of limosilactobacillus reuteri KUB-AC5
มหาวิทยาลัยเกษตรศาสตร์ Massalin Nakphaichit | Thanawat Namrak | วิทยานิพนธ์/Thesis |
| Infant gut mycobiome analysis ITS2 sequencing and targeted metaproteomics in atopic dermatitis
มหาวิทยาลัยเกษตรศาสตร์ Massalin Nakphaichit | Mok, Kevin | วิทยานิพนธ์/Thesis |